Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs9539792 chr13:64106622 C/T 2.74E-5 178 22.63 22.63 26.57 KM Plot
PCPG rs9547705 chr13:37520248 C/A 0.000345 174 4.17 19.1 26.57 KM Plot
PCPG rs9547707 chr13:37541423 G/T 0.000337 176 4.17 24.17 25.87 KM Plot
PCPG rs9547725 chr13:37641637 A/G 0.000356 174 4.17 24.23 26.27 KM Plot
PCPG rs954889 chr8:126143786 C/T 3.01E-5 178 4.17 28.87 25.4 KM Plot
PCPG rs9576148 chr13:37552386 A/G 0.000329 176 4.17 24.23 25.7 KM Plot
PCPG rs9576153 chr13:37580768 C/A 0.000272 178 4.17 25 25.47 KM Plot
PCPG rs9576154 chr13:37581051 T/G 0.000285 178 4.17 24.7 25.7 KM Plot
PCPG rs9577558 chr13:114145199 C/T 3.64E-12 177 24.23 29.5 3.32 KM Plot
PCPG rs9577559 chr13:114155368 G/A 4.65E-12 177 24.23 29.95 3.32 KM Plot
PCPG rs9577567 chr13:114183365 A/G 5.45E-12 176 24.1 30.33 3.32 KM Plot
PCPG rs9594181 chr13:37537967 T/C 0.000337 176 4.17 24.17 25.87 KM Plot
PCPG rs9603121 chr13:37543158 A/G 0.000337 176 4.17 24.17 25.87 KM Plot
PCPG rs9613274 chr22:21273168 A/G 7.74E-5 177 12.93 31.47 25.2 KM Plot
PCPG rs9614653 chr22:45767391 A/G 2.45E-9 178 14.5 25.18 25.6 KM Plot